| antiCODE | Homo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster. | http://bioinfo.ibp.ac.cn/ANTIC... |
| ASRP | Arabidopsis Thaliana. | http://asrp.cgrb.oregonstate.e... |
| BioM2MetDisease | Unspecified. | http://www.bio-bigdata.com/Bio... |
| BmncRNAdb | Bombyx mori. | http://gene.cqu.edu.cn/BmncRNA... |
| BPS | Unspecified. | http://bps.rutgers.edu/ |
| BRAliBase | Saccharomyces cerevisiae, Escherichia coli. | http://projects.binf.ku.dk/pga... |
| CANTATAdb | Arabidopsis Thaliana, Brassica rapa, Glycine Max, Medicago truncatula, Oryza sativa, Vitis vinifera and 37 others. | http://yeti.amu.edu.pl/CANTATA... |
| CCGD | Homo sapiens. | http://crdd.osdd.net/raghava/c... |
| CircNet | Homo sapiens. | http://circnet.mbc.nctu.edu.tw |
| Condor | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes. | http://condor.nimr.mrc.ac.uk/ |
| cre-siRNA | Chlamydomonas reinhardtii. | http://cresirna.cmp.uea.ac.uk/... |
| CRW | Rattus norvegicus, Canis familiaris, Arabidopsis Thaliana, Dictyostelium discoideum, Glycine Max, Neurospora crassa and 1803 others. | http://www.rna.ccbb.utexas.edu... |
| CSRDB | Zea mays, Ozyra sativa, Acinetobacter baumannii ACICU, Corynebacterium diphtheriae HC02, Dehalococcoides mccartyi GT, Flavobacterium psychrophilum JIP02/86. | http://sundarlab.ucdavis.edu/s... |
| DASHR | Homo sapiens. | http://www.lisanwanglab.org/DA... |
| dbDEMC | Homo sapiens. | http://159.226.118.44/dbDEMC/ |
| deepBase | Homo sapiens, Mus musculus, Gallus gallus, Ciona intestinalis, Drosophila melanogaster, Caenorhabditis elegans. | http://deepbase.sysu.edu.cn/ |
| doRiNA | Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans. | http://dorina.mdc-berlin.de |
| EpimiRBase | Unspecified. | http://www.epimirbase.eu |
| ERISdb | Arabidopsis Thaliana, Glycine Max, Oryza sativa, Chlamydomonas reinhardtii, Physcomitrella patens, Selaginella moellendorffii. | http://lemur.amu.edu.pl/share/... |
| EVLncRNAs | Rattus norvegicus, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster, Caenorhabditis elegans and 71 others. | http://biophy.dzu.edu.cn/EVLnc... |
| ExprTargetDB | Homo sapiens. | http://www.scandb.org/apps/mic... |
| fRNAdb | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 37068 others. | http://www.ncrna.org/frnadb |
| GermlncRNA | Homo sapiens. | http://germlncrna.cbiit.cuhk.e... |
| HOCTARdb | Homo sapiens. | http://hoctar.tigem.it/ |
| HuSiDa | Homo sapiens. | http://itb.biologie.hu-berlin.... |
| IGDB.NSCLC | Homo sapiens. | http://igdb.nsclc.ibms.sinica.... |
| Isomir Bank | Homo sapiens, Mus musculus, Danio rerio, Drosophila melanogaster, Arabidopsis Thaliana, Oryza sativa. | http://mcg.ustc.edu.cn/bsc/iso... |
| Isomirs | Homo sapiens, Mus musculus. | http://hood.systemsbiology.net... |
| LeishDB | Leishmania braziliensis. | http://leishdb.com/ |
| LincSNP | Homo sapiens. | http://bioinfo.hrbmu.edu.cn/Li... |
| Lnc2Cancer | Homo sapiens. | http://www.bio-bigdata.com/lnc... |
| Lnc2Meth | Homo sapiens. | http://www.bio-bigdata.com/Lnc... |
| lncATLAS | Homo sapiens. | http://lncatlas.crg.eu |
| lnCeDB | Homo sapiens. | http://gyanxet-beta.com/lnced... |
| LNCipedia | Homo sapiens. | http://www.lncipedia.org |
| LNCmap | Homo sapiens. | http://www.bio-bigdata.com/LNC... |
| lncRInter | Homo sapiens, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster, Caenorhabditis elegans and 9 others. | http://bioinfo.life.hust.edu.c... |
| lncRNAdb | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus and 55 others. | http://lncrnadb.com/ |
| lncRNAdisease | Homo sapiens. | http://202.38.126.151/hmdd/htm... |
| lncRNome | Homo sapiens. | http://genome.igib.res.in/lncR... |
| MeRNA | Unspecified. | http://merna.lbl.gov/ |
| mESAdb | Homo sapiens, Mus musculus, Danio rerio. | http://konulab.fen.bilkent.edu... |
| MicroPC | Arabidopsis Thaliana, Brassica rapa, Glycine Max, Lycopersicon esculentum, Medicago truncatula, Oryza sativa and 121 others. | http://konulab.fen.bilkent.edu... |
| microRNA.org | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans. | http://www.microrna.org/ |
| microTranspoGene | Homo sapiens, Mus musculus, Danio rerio, Caenorhabditis elegans. | http://transpogene.tau.ac.il/m... |
| mimiRNA | Homo sapiens. | http://mimirna.centenary.org.a... |
| miRandb | Unspecified. | http://mirandb.ir |
| miRandola | Homo sapiens. | http://atlas.dmi.unict.it/mira... |
| miRò | Homo sapiens. | http://ferrolab.dmi.unict.it/m... |
| miRBase | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 151 others. | http://www.mirbase.org/ |
| mirCoX | Homo sapiens. | http://210.212.254.116/mircox/... |
| miRDB | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Gallus gallus. | http://www.mirdb.org/ |
| miRecords | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus. | http://mirecords.biolead.org/ |
| mirEX | Arabidopsis Thaliana. | http://bioinfo.amu.edu.pl/mire... |
| miRFANs | Arabidopsis Thaliana, Oryza sativa, Cassava. | http://www.cassava-genome.cn/m... |
| miRGator | Homo sapiens. | http://mirgator.kobic.re.kr/ |
| mirGen | Homo sapiens, Mus musculus. | http://www.microrna.gr/mirgen/ |
| miRHrt | Mus musculus, Danio rerio, Gallus gallus. | http://sysbio.suda.edu.cn/mirh... |
| miRmine | Homo sapiens. | http://guanlab.ccmb.med.umich.... |
| miRNA Body Map | Homo sapiens, Rattus norvegicus, Mus musculus. | http://www.mirnabodymap.org |
| miRNAMap | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes. | http://mirnamap.mbc.nctu.edu.t... |
| miRNEST | Unspecified. | http://rhesus.amu.edu.pl/mirne... |
| miRNeye | Mus musculus. | http://mirneye.tigem.it/ |
| miRPathDB | Homo sapiens, Mus musculus. | https://mpd.bioinf.uni-sb.de/o... |
| miRSponge | Homo sapiens, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster, Arabidopsis Thaliana. | http://www.bio-bigdata.com/miR... |
| miRTarBase | Homo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Gallus gallus, Drosophila melanogaster and 11 others. | http://mirtarbase.mbc.nctu.edu... |
| miRWalk | Homo sapiens, Rattus norvegicus, Mus musculus. | http://www.ma.uni-heidelberg.d... |
| miSolRNA | Solanum lycopersicum. | http://www.misolrna.org/ |
| miTALOS | Homo sapiens, Mus musculus. | http://mips.helmholtz-muenchen... |
| NATsDB | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus. | http://natsdb.cbi.pku.edu.cn/ |
| ncRNAdb | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Gallus gallus, Drosophila melanogaster and 84 others. | http://ncrnadb.trna.ibch.pozna... |
| ncRNAimprint | Homo sapiens, Rattus norvegicus, Mus musculus, Macaca mulatta, Bos Taurus, Ovis aries. | http://rnaqueen.sysu.edu.cn/nc... |
| NNDB | Unspecified. | http://rna.urmc.rochester.edu/... |
| NONCODE | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 908 others. | http://www.noncode.org/ |
| NPInter | Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Saccharomyces cerevisiae, Escherichia coli. | http://www.bioinfo.org.cn/NPIn... |
| NRED | Homo sapiens, Mus musculus. | http://jsm-research.imb.uq.edu... |
| NSDNA | Homo sapiens, Rattus norvegicus, Mus musculus, Gallus gallus, Drosophila melanogaster, Caenorhabditis elegans. | http://www.bio-bigdata.net/nsd... |
| Patrocles | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Gallus gallus, Bos Taurus. | http://www.patrocles.org/ |
| Pharmaco-miR | Unspecified. | http://www.pharmaco-mir.org/ |
| PhenomiR | Homo sapiens. | http://mips.helmholtz-muenchen... |
| PlantNATsDB | Arabidopsis Thaliana, Glycine Max, Medicago truncatula, Vitis vinifera, Ectocarpus siliculosus, Chlamydomonas reinhardtii and 63 others. | http://bis.zju.edu.cn/pnatdb/ |
| Plncdb | Arabidopsis Thaliana. | http://chualab.rockefeller.edu... |
| PmiRExAt | Arabidopsis Thaliana, Oryza sativa, Triticum aestivum, Zea mays. | http://pmirexat.nabi.res.in |
| PmiRKB | Arabidopsis Thaliana, Oryza sativa. | http://bis.zju.edu.cn/pmirkb/ |
| PMRD | Arabidopsis Thaliana, Brassica rapa, Dictyostelium discoideum, Glycine Max, Medicago truncatula, Oryza sativa and 121 others. | http://bioinformatics.cau.edu.... |
| PolymiRTS | Homo sapiens, Mus musculus. | http://compbio.uthsc.edu/miRSN... |
| PseudoBase | Homo sapiens, Mus musculus, Bos Taurus, Saccharomyces cerevisiae, Bombyx mori, Escherichia coli and 121 others. | http://pseudobaseplusplus.utep... |
| RCGD | Homo sapiens. | http://www.juit.ac.in/attachme... |
| Rfam | Arabidopsis Thaliana, Brassica rapa, Glycine Max, Medicago truncatula, Oryza sativa, Vitis vinifera and 270 others. | http://rfam.sanger.ac.uk/ |
| RiceATM | Oryza sativa. | http://syslab3.nchu.edu.tw/ric... |
| RNA FRABASE | Unspecified. | http://rnafrabase.ibch.poznan.... |
| RNA STRAND | Homo sapiens, Canis familiaris, Mus musculus, Bos Taurus, Oryza sativa, Saccharomyces cerevisiae and 48 others. | http://www.rnasoft.ca/strand/ |
| RNAi Codex | Homo sapiens, Rattus norvegicus, Mus musculus, Drosophila melanogaster, Arabidopsis Thaliana. | http://cancan.cshl.edu/cgi-bin... |
| RNAiAtlas | Homo sapiens. | http://www.rnaiatlas.ethz.ch |
| RNAJunction | Unspecified. | http://rnajunction.abcc.ncifcr... |
| S-MED | Homo sapiens. | http://www.oncomir.umn.edu/SME... |
| SCOR | Unspecified. | http://scor.berkeley.edu/ |
| SiLoDb | Arabidopsis Thaliana, Medicago truncatula, Solanum lycopersicum, Ozyra sativa, Chamydomonas reinhardtii. | http://silodb.cmp.uea.ac.uk/ |
| siRecords | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Gallus gallus, Macaca mulatta and 11 others. | http://sirecords.biolead.org/ |
| SM2miR | Unspecified. | http://210.46.85.180:8080/sm2m... |
| smiRNAdb | Homo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Drosophila melanogaster, Caenorhabditis elegans. | http://www.mirz.unibas.ch/clon... |
| snoRNA-LBME-db | Homo sapiens. | http://www-snorna.biotoul.fr/ |
| snoRNP database | Unspecified. | http://www.evolveathome.com/sn... |
| SorghumFDB | Sorghum bicolor. | http://structuralbiology.cau.e... |
| SpermBase | Homo sapiens, Rattus norvegicus, Mus musculus, Oryctolagus cuniculus. | http://www.spermbase.org |
| SRD | Staphylococcus haemolyticus JCSC1435, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis ATCC 12228, Staphylococcus aureus RF122, , Staphylococcus lugdunensis HKU09-01 and 22 others. | http://srd.genouest.org |
| sRNAdb | Unspecified. | http://bioinfo.mikrobio.med.un... |
| sRNATarBase | Escherichia coli, Azobacter vinelandii, Bacillus subtilis, Listeria monocytogenes, Neisseria meningitides, Prochlorococcus marinus and 10 others. | http://ccb.bmi.ac.cn/srnatarba... |
| starBase | Homo sapiens, Mus musculus, Caenorhabditis elegans, Arabidopsis Thaliana, Oryza sativa, Vitis vinifera. | http://starbase.sysu.edu.cn/ |
| TarBase | Homo sapiens, Rattus norvegicus, Mus musculus, Danio rerio, Drosophila melanogaster, Caenorhabditis elegans. | http://diana.cslab.ece.ntua.gr... |
| Telomerase Database | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 252 others. | http://telomerase.asu.edu/ |
| TFCONES | Homo sapiens, Mus musculus, Takifugu rubripes. | http://tfcones.fugu-sg.org/ |
| The Functional lncRNA Database | Homo sapiens, Rattus norvegicus, Mus musculus. | http://valadkhanlab.org/databa... |
| The MIT/ICBP siRNA Database | Homo sapiens, Mus musculus. | http://web.mit.edu/sirna/ |
| The Tomato small RNA Database | Solanum lycopersicum, Solanum pennellii, Solanum lycopersicum x S. pennellii. | http://ted.bti.cornell.edu/ |
| The UCSC Genome Browser database | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Macaca mulatta, Bos Taurus and 40 others. | http://genome.ucsc.edu/ |
| Trans-SAMap | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Gallus gallus. | http://trans.cbi.pku.edu.cn/ |
| TRiP | Drosophila melanogaster. | http://www.flyrnai.org/TRiP-HO... |
| VIRsiRNAdb | BK polyomavirus, Epstein-Barr virus, encephalomyocarditis virus, hepatitis A virus, Hepatitis C Virus, SARS coronavirus and 36 others. | http://crdd.osdd.net/servers/v... |
| YM500 | Homo sapiens, Mus musculus. | http://ngs.ym.edu.tw/ym500/ |
| ZooMir | Homo sapiens, Rattus norvegicus, Canis familiaris, Mus musculus, Danio rerio, Takifugu rubripes and 80 others. | http://insr.ibms.sinica.edu.tw... |
