LincSNP

Database version: 2

RNA Type: Long RNA

Overview: LincSNP 2.0 is an updated database that aims specifically to store and annotate disease-associated single nucleotide polymorphisms (SNPs) in human long noncoding RNAs (lncRNAs) and their transcription factor binding sites (TFBSs). This database attempts to bridge the gap between disease-associated SNPs and human lncRNAs to enhance our understanding of lncRNA function, particularly the potential role of lncRNAs in human disease.

Search Methods:

• Keyword: Search by disease name, lncRNA name or SNP ID
• Genomic Location: By using human genomic coordinates

Source: dbGaP, GAD, GWAS Central, NHGRI GWAS Catalog, PharmGKb, GWASdb, GRASP, ENSEMBL, NONCODE, LNCipedia, LncRBase, GENCODE, LD-SNP

Information Source: Experimental, In silico annotation, Literature.

Information Content: .

Reference: Ning et al. 2017. LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs. 45(D1) D74–D78

PubmedID: 27924020.

Year: 2017

Multiple search: No

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human).

Url: http://bioinfo.hrbmu.edu.cn/LincSNP