lncRInter

Database version: July, 2015

RNA Type: Long RNA

Overview: lncRInter is reliable and high quality lncRNA interaction database containing experimentally validated data. The lncRNA interaction datasets are all extracted from peer-reviewed publications by curators with strict criteria that there were based on certain experimental evidence (e.g. RNA pull-down, luciferase reporter assay, in vitro binding assay, etc.) for direct lncRNA interactions.

Search Methods:

• Keyword: Search by lncRNA or ID, by specifics keywords available in publications, or by the name of interacting partners
• Tabular: Tabular list of all lncRNA interactions available in the Browse tab
• TAG: Search by a specific interaction class (RNA-TF, RNA-protein, RNA-RNA, RNA-DNA) or by species

Source: NPinter, lncRNAdb, LncRNADisease, literature, ENSEMBL, MIM, miRBase, NONCODE, HGNC, Vega, IMGT, LNCpedia, HPRD, MGI

Information Source: Experimental, In silico annotation, Literature, Manual curation.

Information Content: .

Reference: Liu et al. 2017. lncRInter: A database of experimentally validated long non-coding RNA interaction. Journal of Genetics and Genomics. 44(5) 265-268.

PubmedID: 28529080.

Year: 2017

Multiple search: Yes

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Cricetulus griseus (Chinese Hamster), Saccharomyces cerevisiae, Escherichia coli, Synechococcus elongatus, Schizosaccharomyces pombe 972h-, Dictyostelium discoideum AX4, Candida albicans SC5314, Kaposi sarcoma-associated herpesvirus (KSHV).

Url: http://bioinfo.life.hust.edu.cn/lncRInter