mESAdb

RNA Type: miRNA

Overview: microRNA expression and sequence analysis database (mESAdb) is a repository of miRNA sequence and expression multivariate analysis with information on target gene function, expression patterns and human diseases. It also includes some meta-analysis tools to help the user visualize and compare miRNA motif/functional/expression data.

Search Methods:

• Keyword: search by miRNA name (in miRNA search) or motif pattern (in motif & function search).
• TAG: search by microarray data set (in motif and expression search); miRNA pattern (e.g. motif, miRNA list) or region (e.g. 1-8 nucleotide - in motif & function search); or expression dataset, GO domains/terms, KEGG pathways, HUGE terms or Targets (in miRNA search).

Source: miRBase, GEO, KEGG, Gene Ontology, HUGE Navigator Disease, Ensembl Gene IDs, Tools (MEME motif, MicroCosm Target, BioMart).

Information Source: Experimental, In silico annotation.

Information Content: Annotation, Biological Process, Components, Expression, Functional analysis, Gene, Gene Ontology, KEGG, Motif, Multivariate analysis, Sequence, Tissue.

Reference: Kaya et al., 2011

PubmedID: 21177657.

Year: 2011

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Mus musculus (House Mouse), Danio rerio (Zebrafish).

Url: http://konulab.fen.bilkent.edu.tr/mirna/