ASRP

RNA Type: small RNA

Overview: The Arabidopsis thaliana Small RNA Project (ASRP) is a database of small RNAs (e.g. siRNAs, tasiRNA, miRNAs, and their targets) identified from different Arabidopsis genotypes and tissues.

Search Methods:

• Similarity: query your small sequence against the entire population of small RNA data.
• Keyword: search by miRNA name, small RNA sequence, locus identifier.
• TAG: search by data from experiments (e.g. Illumina or 454 sequencers).
• Genomic Location: search by chromosome location (e.g. 1:24416..36433).

Source: In-house experiments and miRBase.

Information Source: Experimental.

Information Content: Annotation, Families data, Next-generation data, Reads, Sequence, small RNA Library, Structure, Target.

Reference: Backman et al., 2008; Gustafson et. al, 2005

PubmedID: 15608278, 17999994.

Year: 2008;2005

Multiple search: Yes

Download: GFF, FASTA, Other.

Genomic Overview: Yes

Organism: Arabidopsis Thaliana (Thale Cress).

Url: http://asrp.cgrb.oregonstate.edu/