miRTarBase

RNA Type: miRNA

Overview: miRTarBase is a database of miRNA-target interactions based on literature surveying. It stores data with experimental support data in 17 species (Human, Mouse, Rat, Chicken, Sheep, Zebrafish, Fruit fly, Silkworm, Nematode, Loblolly pine, Rice, Thale cress, Epstein-Barr virus, HHV-8, HIV-1, Human cytomegalovirus, Vesicular stomatitis virus).

Search Methods:

• Keyword: search by miRNA name, Literature (PMID).
• TAG: search by miRNA family, species, gene symbol (in target gene search), validated method (e.g. reporter assay, western blot or microarray experiments etc).
• Tabular: search by species.

Source: Literature, Experimental (e.g. western blot, microarray and pSILAC), Gene Ontology, KEGG, miRanda.

Information Source: Experimental, In silico annotation, Literature, Manual curation.

Information Content: Annotation, Evidence, Gene, Network, Sequence, Structure, Target gene.

Reference: Naeem et al., 2010

PubmedID: 21071411.

Year: 2011

Multiple search: Yes

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Ovis aries (Sheep), Oryza sativa (Rice), Bombyx mori, Pinus taeda, Human cytomegalovirus, Kaposi sarcoma-associated herpesvirus (HHV8 ), Epstein-Barr virus and 2 others.

Url: http://mirtarbase.mbc.nctu.edu.tw/