BRAliBase

RNA Type: Structure

Overview: BRAliBase is a repository of RNA secondary structure predictions and alignment algorithms. It can be used for structure prediction, sequence alignment, similairty search, phylogenetic modelling and ncRNA gene-finding.

Search Methods:

• Tabular: search by RNA dataset type (secondary structure, alignments, sequence etc).

Source: NMR or crystallography, Rfam sequences.

Information Source: Experimental, In silico annotation, Literature, Manual curation.

Information Content: Algorithm, Alignment, Benchmark, Folding, Homology, Phylogeny, Similarity, Structure.

Reference: Gardner et al., 2005; Gardner and Giegerich, 2004

PubmedID: 15458580, 15860779.

Year: 2005;2004

Multiple search: No

Download: FASTA, Other.

Genomic Overview: No

Organism: Saccharomyces cerevisiae, Escherichia coli.

Url: http://projects.binf.ku.dk/pgardner/bralibase/