Trans-SAMap

RNA Type: NAT

Overview: The Trans-natural Sense-Antisense transcripts Map (Trans-SAMap) database is a repository specific to trans-sense/antisense (SA) pairs. The authors used an in-house pipeline to identify several trans-SA transcripts in ten organisms (human, mouse, rat, cattle, dog, chicken, zebrafish, fly, sea squirt and worm), based on transcriptional units available in NATsDB database

Search Methods:

• Similarity: query your sequence using the BLAST program.
• Keyword: search by gene name, Trans-SA in Gene/Transcripts or mRNA/EST accession number.
• TAG: search by species.
• Tabular: search by species.
• Genomic Location: search by Trans-SA member by chromosome location.

Source: NATsDB (mRNA/EST), H-invDB, UCSC Genome Browser (Repeats), NCBI (Entrez gene, GEO, HomoloGene, SAGEMap), GO and KEGG.

Information Source: Experimental, In silico annotation.

Information Content: Annotation, EST, Evidence, Gene, mRNA, Other variant, Pattern, Sense/Antisense, Sequence, Transcripts.

Reference: Li et al., 2008

PubmedID: 18653530.

Year: 2011; 2011; 2011; 2010; 2010; 2009; 2009; 2009; 2008; 2008; 2007; 2007; 2006; 2006; 2005; 2003

Multiple search: Yes

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Bos Taurus (Cattle), Didemnum vexillum.

Url: http://trans.cbi.pku.edu.cn/