NRED

RNA Type: Long RNA

Overview: ncRNA Expression Database (NRED) is a database of expression data on human and mouse long ncRNAs from various sources (e.g. microarray and in situ hybridization (ISH) data in different experimental conditions). The database includes a cross-referencing annotation that integrates expressed data with secondary structure predictions, imprinted expression data and conservation.

Search Methods:

• Keyword: search by probe terms or probe match score (max and min.).
• TAG: search by platform (e.g. Allen Brain Atlas, GNF Atlas or Compugen Array), probe fields (e.g. probe, sense/antisense genomic context or several target options such as: spliced, imprinted, contains RNAz/PhastCons or overlap TSS/sno/miRNA,).

Source: Local Experiments, GNF, SynAntlas, Allen Brain Atlas, Literature, MGI, GenBank, RefSeq, UniGene, UCSC Genome Browser, miRBase, RNAz, PhastCons.

Information Source: Experimental, In silico annotation.

Information Content: Annotation, Condition, Expression, Imprinted, PhastCons, Platform, Probe Fields, Sense/Antisense, Sequence, Structure, Transcription Start Site.

Reference: Dinger et al., 2008

PubmedID: 18829717.

Year: 2009

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Homo sapiens (Human), Mus musculus (House Mouse).

Url: http://jsm-research.imb.uq.edu.au/nred/