RNA Type: Long RNA
Overview: ncRNA Expression Database (NRED) is a database of expression data on human and mouse long ncRNAs from various sources (e.g. microarray and in situ hybridization (ISH) data in different experimental conditions). The database includes a cross-referencing annotation that integrates expressed data with secondary structure predictions, imprinted expression data and conservation.
Search Methods:
  • Keyword: search by probe terms or probe match score (max and min.).
  • TAG: search by platform (e.g. Allen Brain Atlas, GNF Atlas or Compugen Array), probe fields (e.g. probe, sense/antisense genomic context or several target options such as: spliced, imprinted, contains RNAz/PhastCons or overlap TSS/sno/miRNA,).
Source: Local Experiments, GNF, SynAntlas, Allen Brain Atlas, Literature, MGI, GenBank, RefSeq, UniGene, UCSC Genome Browser, miRBase, RNAz, PhastCons.
Information Source: Experimental, In silico annotation.
Information Content: Annotation, Condition, Expression, Imprinted, PhastCons, Platform, Probe Fields, Sense/Antisense, Sequence, Structure, Transcription Start Site.
Reference: Dinger et al., 2008
PubmedID: 18829717.
Year: 2009
Multiple search: Yes
Download: No
Genomic Overview: No
Organism: Homo sapiens (Human), Mus musculus (House Mouse).

June 2018: Release 3.0