ncRNAdb

RNA Type: Multiple classes

Overview: The Noncoding RNA Database (ncRNAdb) is a repository that centralizes the information concerning regulatory noncoding transcripts, excluding housekeeping RNAs, microRNAs and snoRNAs. There is also information of RNAs known to be related to different important biological roles, such as diseases, stress responses, imprinted transcripts and dosage compensation.

Search Methods:

• Similarity: search sequences using the BLAST program.
• Keyword: search by organism, transcripts/RNA symbol or GenBank accession number.

Source: Genbank, H-invDB, FANTOM3, Rfam, UCSC Genome Browser.

Information Source: Experimental, In silico annotation.

Information Content: Annotation, Disease, Dosage compensation, Imprinted transcripts, Nervous cells, Sequence, Stress.

Reference: Szymanski et al., 2007

PubmedID: 17169980.

Year: 2007

Multiple search: No

Download: FASTA.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Ovis aries (Sheep), Sus scrofa (Wild Boar), Aotus trivirgatus, Cavia porcellus (Guinea Pig), Cricetulus griseus (Chinese Hamster) and 75 others.

Url: http://ncrnadb.trna.ibch.poznan.pl/