TarBase

RNA Type: miRNA

Overview: TarBase is a manually curated database of experimentally supported microRNA targets from several organisms (Caenorhabditis elegans, Danio rerio, Droshopila, Homo sapiens, Mus musculus, plants, Rattus norvegicus and unspecified viruses. It also stores data of regulatory interaction between miRNAs and target 3'-UTRs.

Search Methods:

• TAG: search by organism, miRNA, gene or restriction query option (e.g. miRNA-Target interaction, biological function, validation method or literature/source).

Source: Literature.

Information Source: Experimental.

Information Content: Annotation, Experimental Condition, Gene, Regulatory information, Sequence, Target gene.

Reference: Papadopoulos et al., 2009; Sethupathyet al., 2006

PubmedID: 16373484, 18957447.

Year: 2009;2006

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans.

Url: http://diana.cslab.ece.ntua.gr/tarbase/