lncRNAdb

RNA Type: Long RNA

Overview: lncRNAdb is a database specific of annotation of eukaryotic long non-coding RNAs (lncRNAs). This repository contains information of lncRNAs in different functional categories (e.g. disease, pathogen-related, imprinted, etc).

Search Methods:

• Similarity: search by sequence consensus pattern (e.g. GAT(U)C).
• Keyword: search by lncRNA name, description (e.g. terms as disease, tissue etc).
• TAG: search by species or function.

Source: UCSC Genome Browser, NRED (Noncoding RNA Expression Database), Literature.

Information Source: Experimental, In silico annotation, Literature.

Information Content: Annotation, Associated Conservation, Bifunctional, Components, Disease, Eukaryota, Expression, Imprinted, Long RNA, Pathogen, Sequence.

Reference: Amaral et al., 2011

PubmedID: 21112873.

Year: 2011

Multiple search: Yes

Download: No

Genomic Overview: Yes

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Ovis aries (Sheep), Sus scrofa (Wild Boar), Monodelphis domestica, Pan troglodytes (Chimpanzee) and 46 others.

Url: http://lncrnadb.com/