smiRNAdb

RNA Type: miRNA

Overview: smiRNAdb is a database of miRNAs obtained by sequencing of in-house small RNA libraries from different tissues and cell types. smiRNAdb was integrate to to the MirZ web server.

Search Methods:

• Similarity: query your sequence using the WU-BLAST program. The search can be restricted by organism and by p-value threshold.
• TAG: search by species and tissue/samples type (in miRNA sample, clustering or visual miRNA expression profiles searches); or by miRNA options (e.g. miRNA name - in search of visual miRNA expression profiles search).

Source: Tuschl Lab.

Information Source: Experimental.

Information Content: Cell type, Cluster, Expression, Model organisms, Sample, Sequence, Tissue, Tissue.

Reference: Landgraf et al., 2007

PubmedID: 17604727.

Year: 2007

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans.

Url: http://www.mirz.unibas.ch/cloningprofiles/