RNA Type: miRNA
Overview: smiRNAdb is a database of miRNAs obtained by sequencing of in-house small RNA libraries from different tissues and cell types. smiRNAdb was integrate to to the MirZ web server.
Search Methods:
  • Similarity: query your sequence using the WU-BLAST program. The search can be restricted by organism and by p-value threshold.
  • TAG: search by species and tissue/samples type (in miRNA sample, clustering or visual miRNA expression profiles searches); or by miRNA options (e.g. miRNA name - in search of visual miRNA expression profiles search).
Source: Tuschl Lab.
Information Source: Experimental.
Information Content: Cell type, Cluster, Expression, Model organisms, Sample, Sequence, Tissue, Tissue.
Reference: Landgraf et al., 2007
PubmedID: 17604727.
Year: 2007
Multiple search: Yes
Download: No
Genomic Overview: No
Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans.

June 2018: Release 3.0