RNAJunction

RNA Type: Structure

Overview: RNAJunction is a database of structure and sequence information for RNA junction elements (e.g. multiloop and kissing structures). The JunctionScanner software is used for detecting, extracting and analyzing RNA junctions, kissing loops, internal loops and bulges from PDB coordinate files.

Search Methods:

• Keyword: search by Structure (Entry ID, NC-IUBMB class, angle range), sequence id or source (PDB ID, author and publication).
• TAG: search by structure type (e.g. kissing loop, bulge/internal loop etc) or experimental method.
• Tabular: search by structure type (e.g. kissing loop, bulge/internal loop etc).

Source: PDB, SCOR and MMDB.

Information Source: Experimental, In silico annotation.

Information Content: Angle, Classification, Sequence, Structural Elements, Structure.

Reference: Bindewald et al., 2008

PubmedID: 17947325.

Year: 2008

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Unspecified.

Url: http://rnajunction.abcc.ncifcrf.gov/