NNDB

RNA Type: Structure

Overview: The Nearest Neighbor Database (NNDB) is a repository of nearest neighbor parameters for RNA folding rules assembled in 1999 (Mathews et al., 1999) and 2004 (Mathews et al., 2004). These parameters are used in several secondary structure prediction tools (e.g. Mfold, RNAfold).

Search Methods:

• Tabular: search by type of structure (e.g. G-U pair, bulge loops etc) and folding energy information.

Source: Mathews et al., 2004; Mathews et al., 1999.

Information Source: Experimental, Literature.

Information Content: Annotation, Folding, Folding Parameters, Free energy, Interaction, Structural Elements, Structure.

Reference: Turner and Mathews, 2010

PubmedID: 19880381.

Year: 2010

Multiple search: No

Download: Other.

Genomic Overview: No

Organism: Unspecified.

Url: http://rna.urmc.rochester.edu/NNDB/