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NRDR - The Non-coding RNA Databases Resource


Database version: 2015
RNA Type: Long RNA
Overview: GermlncRNA systematically annotates lncRNAs for each specialized germ cell stage using public annotations and de novo discovery of novel lncRNAs by Hybrid Transcriptome Assembly (HTA) approach. It also provides comprehensive information on regulatory signatures, expression, and target genes in cis- or trans- interaction. The data retrieved from Data Search section can be further processed by Galaxy.
Search Methods:
  • Keyword: Search by GlncRNA ID, ENSEMBL ID, RefSeq ID, NONCODE ID, fRNAdb ID. The search can be filtered by a set of different genomic and transcriptomic features
  • Similarity: BLAST searches against stored lncRNAs
Source: ENSEMBL, NONCODE, UCSC Genes, fRNAdb, RefSeq, Galaxy
Information Source: Experimental, In silico annotation, Literature, Manual curation.
Information Content: .
Reference: Luk et al. 2015. GermlncRNA: a unique catalogue of long non-coding RNAs and associated regulations in male germ cell development. Database. 2015:bav044.
PubmedID: 25982314.
Year: 2015
Multiple search: Yes
Download: No
Genomic Overview: Yes
Organism: Homo sapiens (Human).

Url: http://germlncrna.cbiit.cuhk.edu.hk
June 2018: Release 3.0