RNA Type: Structure
Overview: The RNA FRABASE is a database of RNA three-dimensional fragments and the corresponding complexes of structures.
Search Methods:
  • Keyword: search by sequence and/or structure.
  • TAG: search by basic structural elements (residues, base pairs, multiplet, dinucleotide steps, stems and loops) where there are some parameters as: experimental method, structure element length (e.g. loop or stem length), residues, base pair classification (Westhof's or Saenger's notation) etc.
  • Tabular: search by secondary structure.
Source: PDB, NDB
Information Source: Experimental, In silico annotation.
Information Content: Base pair, Class, Crystallography, Fragments of structure, Models, Residue, Resolution, Sequence, Structural Elements, Structure.
Reference: Popenda et al., 2008
PubmedID: 17921499, 20459631.
Year: 2010;2008
Multiple search: Yes
Download: No
Genomic Overview: No
Organism: Unspecified.

Url: http://rnafrabase.ibch.poznan.pl/
June 2018: Release 3.0