RNA FRABASE

RNA Type: Structure

Overview: The RNA FRABASE is a database of RNA three-dimensional fragments and the corresponding complexes of structures.

Search Methods:

• Keyword: search by sequence and/or structure.
• TAG: search by basic structural elements (residues, base pairs, multiplet, dinucleotide steps, stems and loops) where there are some parameters as: experimental method, structure element length (e.g. loop or stem length), residues, base pair classification (Westhof's or Saenger's notation) etc.
• Tabular: search by secondary structure.

Source: PDB, NDB

Information Source: Experimental, In silico annotation.

Information Content: Base pair, Class, Crystallography, Fragments of structure, Models, Residue, Resolution, Sequence, Structural Elements, Structure.

Reference: Popenda et al., 2008

PubmedID: 17921499, 20459631.

Year: 2010;2008

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Unspecified.

Url: http://rnafrabase.ibch.poznan.pl/