snoRNA-LBME-db

RNA Type: snoRNA

Overview: snoRNA-LBME-db or snoRNABase is a database of human snoRNAs and scaRNAs, including their predicted target genes and the potential base-pairing interactions within this target. There is also secondary structure information of snoRNA, telomerase RNA and basic information on the relationship between snoRNAs, host genes, and genomic imprinting.

Search Methods:

• Similarity: search your sequence using the BLAST program.
• Keyword: search by name from literature, the RNA symbol and snoRNA type, length, GenBank accession number and target RNA.
• Tabular: search by C/D or H/ACA box snoRNAs, scaRNAs, sno/scaRNA position, Human-yeast snoRNA correspondence and alignments.

Source: Literature, GenBank, UCSC Genome Browser, miRBase, Rfam, GeneLinx, GeneCards, OMIM.

Information Source: Experimental, In silico annotation, Literature.

Information Content: Alignment, Annotation, Gene, Sequence, Target.

Reference: Lestrade et al., 2006

PubmedID: 16381836.

Year: 2006

Multiple search: Yes

Download: No

Genomic Overview: Yes

Organism: Homo sapiens (Human).

Url: http://www-snorna.biotoul.fr/