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NRDR - The Non-coding RNA Databases Resource


Database version: Dec 22, 2015
RNA Type: small RNA
Overview: DASHR (Database of small human noncoding RNAs) provides a comprehensive information resource on human small non-coding RNA (sncRNA) genes, precursor and mature sncRNA annotations, sequence, expression levels and RNA processing information across 42 normal tissues and cell types in human. The content of the database derives from integrating annotation data with curation, annotation, and computational analysis of 187 small-RNA (smRNA-seq) deep sequencing datasets from over 30 independent studies. DASHR contains information on over 48,000 precursor and mature sncRNA annotations in the human genome, of which 82% are expressed in one or more of the curated tissues and cell types.
Search Methods:
  • Genomic Location: Search by genomic coordinates
  • Keyword: Search by HGNC symbol, RefSeq ID, UCSC ID, small RNA name, or gene name
  • Similarity: Sequence search is available. The algorithm used in the search is not informed.
  • Tabular: Browse through the list of small RNAs
Information Source: Experimental, In silico annotation.
Information Content: .
Reference: Leung et al. 2015. Nucleic Acids Research. doi:10.1093/nar/gkv1188
PubmedID: 26553799.
Year: 2016
Multiple search: No
Download: BED, GFF, GTF, Other.
Genomic Overview: No
Organism: Homo sapiens (Human).

Url: http://www.lisanwanglab.org/DASHR/smdb.php
June 2018: Release 3.0