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NRDR - The Non-coding RNA Databases Resource


Database version: December 16th 2015
RNA Type: Multiple classes
Overview: CircNet used transcriptome sequencing datasets to systematically identify the expression of circRNAs (including known and newly identified by their in-house pipeline) in 464 RNA-seq samples. The database provides the following resources: (i) novel circRNAs, (ii) integrated miRNA-target networks, (iii) expression profiles of circRNA isoforms, (iv) genomic annotations of circRNA isoforms (e.g. 282,948 exon positions), and (v) sequences of circRNA isoforms. CircNet databasealso provides tissue-specific circRNA expression profiles and circRNA-miRNA-gene regulatory networks. It generates an integrated regulatory network that illustrates the regulation between circRNAs, miRNAs and genes.
Search Methods:
  • Keyword: Search by miRNA name
  • Similarity: Blast search against stored ncRNAs
Source: SRA, UCSC Genome Browser, miRTarBase, miRBase,
Information Source: Experimental, In silico annotation.
Information Content: .
Reference: Liu et al. 2016. 44(D1):D209-15.
PubmedID: 26450965.
Year: 2016
Multiple search: No
Download: Other.
Genomic Overview: Yes
Organism: Homo sapiens (Human).

Url: http://circnet.mbc.nctu.edu.tw
June 2018: Release 3.0