microTranspoGene

RNA Type: miRNA

Overview: microTranspoGene is a database of human, mouse, zebrafish and nematode microRNAs derived from transposable elements (TEs). It stores information of sequenced transcripts or structure-predicted microRNAs in which the hairpin structures are originated by the insertion of transposable elements.

Search Methods:

• TAG: search by organism or a specific pre-microRNA.

Source: miRBase, UCSC Genome Browser, RefSeq, Swiss-Prot, Galaxy, Borchert et al., 2006

Information Source: Experimental, In silico annotation.

Information Content: Gene, Localization, Repeat, Sequence, Transposable Elements.

Reference: Levy et al., 2007

PubmedID: 17986453.

Year: 2008

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Mus musculus (House Mouse), Danio rerio (Zebrafish), Caenorhabditis elegans.

Url: http://transpogene.tau.ac.il/microTranspoGene.html