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NONCODE
RNA Type: Multiple classes
Overview: NONCODE is a database of ncRNA (excluding tRNAs and rRNAs) extracted from Genbank/PubMed entries after manually curated analysis. The main RNAs classes include miRNA, snoRNA, snRNA, tmRNA, SRP RNA and gRNA. There is also information of ncRNAs related to disease, imprinting, repeats, sex specific, species specific, stage specific, stress induced, stress repressed and tissue specific ncRNAs.
Search Methods:
- Similarity: search sequences using the BLAST program.
- Keyword: search by ncid, uniqid, accession number, class alias, name, role, mechanism, location, pfclass, specific, note, organism, molecule type, division, definition, refid, authors, title, journal, medline id, pubmed id, or ncRNA name. Keyword searches are restricted by the TAG options.
- TAG: search by ncRNA, uniqncRNA, nucleotide or reference.
- Tabular: search by organism, ncid, uniqid, accession, class, pfclass name (in Browse DB section); or in a list of 9 specific groups (disease related ncRNA, imprinted ncRNA, repeat ncRNA, sex specific ncRNA, species specific ncRNA, stage specific ncRNA, stress induced or repressed ncRNA, or tissue specific ncRNA).
Source: GenBank, Literature and PubMed.
Information Source: Experimental, In silico annotation, Manual curation.
Information Content: Annotation, Cellular Process, Disease, Imprinted, ncRNA classification, Process Function, Repeat, Sequence, Sex specific, Species specific, Stage, Stress, Tissue.
Reference: He et al., 2008; Liu et al., 2005
PubmedID: 15608158, 18000000.
Year: 2008;2005
Multiple search: No
Download: FASTA, Other.
Genomic Overview: No
