MicroPC

RNA Type: miRNA

Overview: MicroPC is a database of miRNA and their targets in plant genomes, obtained from literature and EST data analysis. MicroPC displays comparative views of miRNAs in different plant species and also predicts potential targets from miRNA input.

Search Methods:

• Similarity: search sequences usingthe BLAST program against MicroPC data.
• Keyword: search by miRNA name/AC (e.g. MIMAT0000166) or ID (e.g. ath-miR156a) or sequence (in miRNA search); miRNA name or UniProt accession number (in Target search);
• TAG: search by Plant species (in miRNA/Target search) and Gene Ontology (in Target search).

Source: miRBase, PlantGDB, Rfam, UniProtKB/Swiss-Prot/TrEMBL, secondary structure predictions with UNAFold.

Information Source: Experimental, In silico annotation, Manual curation.

Information Content: Annotation, Conservation, Gene Ontology, Plant, Predicted secondary structure, Sequence, Structure, Target gene.

Reference: Mhuantong and Wichadakul, 2009

PubmedID: 19660144.

Year: 2009

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: No

Organism: Arabidopsis Thaliana (Thale Cress), Brassica rapa, Glycine Max (Soybean), Lycopersicon esculentum, Medicago truncatula (Barrel Medic), Oryza sativa (Rice), Populus tremula, Vitis vinifera, Pinus taeda, Physcomitrella patens, Selaginella moellendorffii, Brassica napus, Carica papaya (Papaya), Ricinus communis (Castor bean), Arachis hypogaea and 112 others.

Url: http://konulab.fen.bilkent.edu.tr/mirna/