antiCODE

RNA Type: NAT

Overview: antiCODE is a database of non-redundant natural sense-antisense transcript pairs from twelve eukaryotic model organisms (human, mouse, rat, frog, fruit fly, nematode, sea squirt, chicken, zebrafish, cow, rice and thale cress).

Search Methods:

• Tabular: search by sense/antisense, coding/noncoding, cis/trans and organism.
• Similarity: search sequences using the BLAST program.
• Keyword: search by accession number, UniGene or RefSeq name and species name.
• TAG: search by gene or organism.

Source: Literature, NCBI and RIKEN/FANTOM Project.

Information Source: Experimental, In silico annotation, Literature.

Information Content: Annotation, Cis/Trans, Condition, Model organisms, Natural Antisense transcript, Sense/Antisense, Sequence, Transcripts.

Reference: Yin et al., 2007

PubmedID: 17760969.

Year: 2007

Multiple search: Yes

Download: FASTA.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Bos Taurus (Cattle), Oryza sativa (Rice), Xenopus tropicalis, Didemnum vexillum.

Url: http://bioinfo.ibp.ac.cn/ANTICODE