SCOR

RNA Type: Structure

Overview: Structural Classification Of RNA (SCOR) is a database of RNA structures (three-dimensional motifs, function and tertiary interactions). Classification and description for each class of RNA structure is provided to help to create a common glossary (including structural and functional classification). The database includes several types of RNAs such as transfer, ribosomal, ribozymes, small nuclear RNAs, SRP and viral packaging RNA.

Search Methods:

• Similarity: search by a sequence pattern (e.g. GNRA, GACG or GCAA)
• Keyword: search by PDB/NDB ID, Residue or any other terms (e.g. tetraloop).
• Tabular: search by PDB/NDB list, structural classification (e.g. hairpin loop), functional classification (e.g. molecular, motif), tertiary interaction.

Source: PDB and NDB.

Information Source: Experimental.

Information Content: Class, Classification, Interaction, Models, Molecular Function, Motif, Structural Elements, Structure.

Reference: Klosterman et al., 2002, 2004

PubmedID: 14681389.

Year: 2004;2002

Multiple search: Yes

Download: Other.

Genomic Overview: No

Organism: Unspecified.

Url: http://scor.berkeley.edu/