RNA Type: miRNA
Overview: doRiNA is a database focused in post-transcriptional regulation which integrates information related to biding site data between RNA biding proteins (RBPs) and microRNAs.
Search Methods:
  • Similarity: search sequences using the BLAT program.
  • Keyword: search by Gene Symbol, NCBI RefSeq.
  • TAG: search by clade, genome, assembly, Gene Symbol, NCBI RefSeq or regulators (RBPs and/or miRNAs)
Source: In-house experiments (e.g. PAR-CLIP) and literature experiments (e.g. HITS-CLIP, Hafner et al. 2010 - Reference 11), Tools (e.g. PicTar), UCSC Genome Browser, miRBase v16
Information Source: Experimental, In silico annotation, In silico annotation.
Information Content: Annotation, Binding site, Prediction tools, RNA binding proteins, Target gene.
Reference: Anders et al., 2011
PubmedID: 22086949.
Year: 2011
Multiple search: Yes
Download: Other.
Genomic Overview: Yes
Organism: Homo sapiens (Human), Mus musculus (House Mouse), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans.

June 2018: Release 3.0