doRiNA

RNA Type: miRNA

Overview: doRiNA is a database focused in post-transcriptional regulation which integrates information related to biding site data between RNA biding proteins (RBPs) and microRNAs.

Search Methods:

• Similarity: search sequences using the BLAT program.
• Keyword: search by Gene Symbol, NCBI RefSeq.
• TAG: search by clade, genome, assembly, Gene Symbol, NCBI RefSeq or regulators (RBPs and/or miRNAs)

Source: In-house experiments (e.g. PAR-CLIP) and literature experiments (e.g. HITS-CLIP, Hafner et al. 2010 - Reference 11), Tools (e.g. PicTar), UCSC Genome Browser, miRBase v16

Information Source: Experimental, In silico annotation, In silico annotation.

Information Content: Annotation, Binding site, Prediction tools, RNA binding proteins, Target gene.

Reference: Anders et al., 2011

PubmedID: 22086949.

Year: 2011

Multiple search: Yes

Download: Other.

Genomic Overview: Yes

Organism: Homo sapiens (Human), Mus musculus (House Mouse), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans.

Url: http://dorina.mdc-berlin.de