ERISdb

Database version: 2013

RNA Type: Multiple classes

Overview: ERISdb is a database of plant splice sites and splicing signals. It currently collects information from eight species. They used in-house developed algorithms to search for splice-site associated data like splicing signals (including polypyrimidine tracts or cis-regulatory elements), U12 introns or to determine microRNA gene structures.

Search Methods:

• Keyword: Search by species name, transcript biotype, filtering by different features

Source: ENSEMBL, SRA, RNA-seq, U12DB, literature, ClustalW, BLAST, miRBase, dbEST

Information Source: Experimental, In silico annotation, Literature.

Information Content: .

Reference: Szcześniak et al. 2013. ERISdb: a database of plant splice sites and splicing signals. Plant Cell Physiol. 54(2):e10.

PubmedID: 23299413.

Year: 2013

Multiple search: No

Download: BED, Other.

Genomic Overview: No

Organism: Arabidopsis Thaliana (Thale Cress), Glycine Max (Soybean), Oryza sativa (Rice), Chlamydomonas reinhardtii (Green Alga), Physcomitrella patens, Selaginella moellendorffii, Zea mays.

Url: http://lemur.amu.edu.pl/share/ERISdb/home.html