PolymiRTS

RNA Type: miRNA

Overview: Polymorphisms in microRNA Target Sites Database (PolymiRTS) is a repository of the characterization of polymorphisms in microRNA target sites. It includes information related to SNPs, phenotypes and expression data (microarray/quantitative trait locus). Version 2.0 include new features: (i) diseases and traits in GWAS, (ii) supported by experimental methods and (iii) polymorphisms in miRNA seed regions.

Search Methods:

• Keyword: search by SNP ID, miRNA name, gene name/ID/description, phenotype, Trait OR GO (Accession or Name).
• TAG: search by species, function class, experimental support, conservation level or browse data by: gene with SNP in miRNA target site, SNP in miRNA seeds, human disease and traits or experimentally supported targets.
• Genomic Location: by organism, mouse strains and chromosome coordinate.

Source: UCSC, miRBase, dbSNP, dbGAP, NHGRI, GWAS, CLIP-Seq, GeneNetwork, GTEx, dbSNP, Galaxy, TargetScan, Multiz, miRecords, TarBase, miRTarBase, Ensembl and in-house method for identification of PolymiRTS.

Information Source: Experimental, In silico annotation, In silico annotation.

Information Content: Expression, Gene, Phenotype, Polymorphism, QTL, Quantitative trait locus, Silencing process, SNP, Structure, Target gene.

Reference: Bao et al., 2007; Ziebarth et al., 2012

PubmedID: 17099235, 22080514.

Year: 2007; 2012

Multiple search: Yes

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Mus musculus (House Mouse).

Url: http://compbio.uthsc.edu/miRSNP/