RNA Type: miRNA
Overview: Polymorphisms in microRNA Target Sites Database (PolymiRTS) is a repository of the characterization of polymorphisms in microRNA target sites. It includes information related to SNPs, phenotypes and expression data (microarray/quantitative trait locus). Version 2.0 include new features: (i) diseases and traits in GWAS, (ii) supported by experimental methods and (iii) polymorphisms in miRNA seed regions.
Search Methods:
  • Keyword: search by SNP ID, miRNA name, gene name/ID/description, phenotype, Trait OR GO (Accession or Name).
  • TAG: search by species, function class, experimental support, conservation level or browse data by: gene with SNP in miRNA target site, SNP in miRNA seeds, human disease and traits or experimentally supported targets.
  • Genomic Location: by organism, mouse strains and chromosome coordinate.
Source: UCSC, miRBase, dbSNP, dbGAP, NHGRI, GWAS, CLIP-Seq, GeneNetwork, GTEx, dbSNP, Galaxy, TargetScan, Multiz, miRecords, TarBase, miRTarBase, Ensembl and in-house method for identification of PolymiRTS.
Information Source: Experimental, In silico annotation, In silico annotation.
Information Content: Expression, Gene, Phenotype, Polymorphism, QTL, Quantitative trait locus, Silencing process, SNP, Structure, Target gene.
Reference: Bao et al., 2007; Ziebarth et al., 2012
PubmedID: 17099235, 22080514.
Year: 2007; 2012
Multiple search: Yes
Download: Other.
Genomic Overview: No
Organism: Homo sapiens (Human), Mus musculus (House Mouse).

Url: http://compbio.uthsc.edu/miRSNP/
June 2018: Release 3.0