BPS

RNA Type: Structure

Overview: Base Pair Structure (BPS) is a database of RNA base-pair spatial arrangements. Structures were obtained from the Nucleic Acid Database, and from base-pairs characterized using the tool 3DNA.

Search Methods:

• Keyword: search by NDB or PDB ID.
• TAG: search by structure class.
• Tabular: search by base pair or saenger's pattern (e.g. Watson-crick base pairs, hydrogen bond etc).

Source: PDB, NDB, 3DNA.

Information Source: Experimental.

Information Content: Base pair, Class, Interaction, Isosteres, Orientation, Pattern, Structure.

Reference: Xin and Olson, 2008

PubmedID: 18845572.

Year: 2009

Multiple search: No

Download: No

Genomic Overview: No

Organism: Unspecified.

Url: http://bps.rutgers.edu/