CRW

RNA Type: Structure

Overview: The Comparative RNA Web database (CRW) is a repository of comparative analysis of ribosomal, transfer and the catalytic intron group I and II RNAs. It stores sequence and structure information for a large number of organisms from different kingdoms.

Search Methods:

• Keyword: search by organism, phylogeny, common name, sequence length, intron position.
• TAG: search by dataset (e.g. 16S rRNA), sequence length, Exon, ORF, secondary structures, group class (in general access to metadata); or by organism, phylogenetic, classification, (in Secondary Structure Diagram Retrieval); or RNA class or cell location (in both).
• Tabular: search by RNA structure models, base pair, single bases, nucleotide frequency/modifications, RNA conservation diagrams, introns, RNA sequence/structure by organism, motifs, RNA folding, phylogenetic analysis (for rRNA), lateral gene transfer (for Group I intron).

Source: Literature (also Crystal dataset), GenBank, Alignments.

Information Source: Experimental, In silico annotation, Literature, Manual curation.

Information Content: Alignment, Base pair, Crystal data, Diagram, Evolution, Folding, Models, Modifications, Phylogeny, Sequence, Structure.

Reference: Cannone et al., 2002

PubmedID: 11869452.

Year: 2002

Multiple search: No

Download: No

Genomic Overview: No

Organism: Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Arabidopsis Thaliana (Thale Cress), Dictyostelium discoideum, Glycine Max (Soybean), Neurospora crassa, Oryza sativa (Rice), Saccharomyces cerevisiae, Schizosaccharomyces pombe, Felis catus (Cat), Chlamydomonas reinhardtii (Green Alga), Picea abies, Gossypium hirsutum, Malus domestica, Hordeum vulgare and 1794 others.

Url: http://www.rna.ccbb.utexas.edu/