miRNAMap

RNA Type: miRNA

Overview: miRNAMap is a database containing microRNAs, corresponding target genes, genomic maps and expression profiles on normal and tumorous cells (microarray and qPCR). It also stores information related to both experimentally-validated and predicted microRNA target genes.

Search Methods:

• Keyword: search by miRNA name or target gene.
• TAG: search by organism name and constraints of miRNA Target search (e.g. criteria 1 by target sites predicted by at least two tools; or criteria 2 by locates in accessible regions; and criteria 3 in target gene contains multiple target sites).
• Tabular: search by species (miRNA or target gene).

Source: miRBase, TarBase, Literature, GEO, Lu et al., 2005, Target Prediction Tools (miRanda, RNAhybrid and TargetScan), Prediction secondary structure (Sfold).

Information Source: Experimental, In silico annotation.

Information Content: Annotation, Expression, Localization, Metazoan genomes, Predicted secondary structure, qPCR data, Sequence, Structure, Target gene, Tissue, Tumor.

Reference: Hsu et al., 2008; Hsu et al., 2006

PubmedID: 16381831, 18029362.

Year: 2008;2006

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Takifugu rubripes (Fugu), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Monodelphis domestica, Xenopus tropicalis, Anopheles gambiae.

Url: http://mirnamap.mbc.nctu.edu.tw/