cre-siRNA

RNA Type: small RNA

Overview: The Chlamydomonas reinhardtii silencing RNA database (cre-siRNA) is a repository of short RNAs characterized in single-cell green algae. This database contains small RNA based on experiments with 454 high-throughput sequencing (including siRNA and miRNA), and their predicted target mRNAs.

Search Methods:

• Similarity: search sequences using the BLAST program.
• Keyword: search by small RNA loci or individual sRNA, sRNA targets (sequence or EST accession) or locus ID.
• TAG: search by filter criteria (e.g. overlap CDS/Transposable element, is a phased/miRNA candidate, sequence length, matches).

Source: Experimental.

Information Source: Experimental.

Information Content: High-throughput sequencing, Locus, Next-generation data, Sequence, Targets.

Reference: Molnar et al., 2007

PubmedID: 17538623.

Year: 2007

Multiple search: Yes

Download: FASTA.

Genomic Overview: Yes

Organism: Chlamydomonas reinhardtii (Green Alga).

Url: http://cresirna.cmp.uea.ac.uk/