PlantNATsDB

RNA Type: NAT

Overview: PlantNATsDB is database of natural antisense transcripts (NAT) with information related to both cis-NAT and trans-NAT classes from 69 plant species. This database integrates a pipeline for NAT prediction and classification, small RNAs high-throughput sequencing data, expression, interaction network visualization, gene information and GO annotation.

Search Methods:

• Similarity: search sequences using the BLAST program with the option to change some parameters.
• Keyword: search by Locus ID, Gene Locus Name, Gene Alias, transcript name or any keyword term.
• TAG: search by organism, type of NAT (cis, trans or both)

Source: Specific genome-sequencing projects, The Gene Index Project, Gene Expression

Information Source: Experimental, In silico annotation, In silico annotation.

Information Content: Annotation, Expression, Gene Ontology, Natural Antisense transcript, Plant.

Reference: Chen et al., 2011

PubmedID: 22058132.

Year: 2011

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: Yes

Organism: Arabidopsis Thaliana (Thale Cress), Glycine Max (Soybean), Medicago truncatula (Barrel Medic), Vitis vinifera, Ectocarpus siliculosus, Chlamydomonas reinhardtii (Green Alga), Picea abies, Pinus taeda, Physcomitrella patens, Selaginella moellendorffii, Arabidopsis lyrata, Brassica napus, Carica papaya (Papaya), Ricinus communis (Castor bean), Lotus japonicus and 54 others.

Url: http://bis.zju.edu.cn/pnatdb/