ZooMir

RNA Type: miRNA

Overview: ZooMir is a database of homologous microRNA identified in animal genomes. A miRNA discovery pipeline was used to identify candidates for evolutionary-conserved miRNAs between 86 species. The predicted results on human, medaka and rat were experimentally validated using on deep-sequencing data.

Search Methods:

• Tabular: search by species, class of miRNA (with miRNA and homologous data) or by evolutionary pattern information (e.g. table with the comparison between miRNAs).

Source: miRBase, UCSC Genome Bioinformatics web site, RefSeq, In house pipeline (BLAST, Srnaloop, LIBSVM for SVM classification).

Information Source: Experimental, In silico annotation.

Information Content: Animal, Class, Evolution, Homology, Orthologs, Paralogs, Pattern, Pipeline, SVM Classification.

Reference: Li et al., 2010

PubmedID: 20347954.

Year: 2010

Multiple search: No

Download: No

Genomic Overview: Yes

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Takifugu rubripes (Fugu), Gallus gallus (Chicken), Ciona intestinalis, Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Ovis aries (Sheep), Sus scrofa (Wild Boar), Monodelphis domestica and 71 others.

Url: http://insr.ibms.sinica.edu.tw/ZooMir/