RNA STRAND

RNA Type: Structure

Overview: The RNA Secondary Structure and Statistical Analysis Database (RNA STRAND) is a database of known secondary structures of several RNA types (e.g. group I intron, RNase P, ribozymes, SRP).

Search Methods:

• Similarity: search by conserved sequence pattern (e.g. AMGHGNUC*ACGNA).
• Keyword: search by organism, source ID, sequence or abstract shapes.
• TAG: search by RNA type, source, length, validation (NMR or X-Ray), number of molecules in the complex, fragment, duplicate, abstract shapes level or not to include non-redundant sequence.
• Tabular: search by RNA STRAND ID, Molecule name, RNA Type, Organism, Source, Source ID, Length.

Source: Rfam, RCSB/PDB/NDB, CRW, tmRNA, Sprinzl tRNA Database, RNase P Database, SRP Database, Nucleic Acid Database, RNAView software.

Information Source: Experimental, In silico annotation, Manual curation.

Information Content: Annotation, Correlation, Cumulative distribution , Domain, Histograms, Motif, Source, Structural Elements, Structure.

Reference: Andronescu et al., 2008

PubmedID: 18700982.

Year: 2008

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Homo sapiens (Human), Canis familiaris (Dog), Mus musculus (House Mouse), Bos Taurus (Cattle), Oryza sativa (Rice), Saccharomyces cerevisiae, Xenopus laevis, Human immunodeficiency virus 1 (HIV ), Escherichia coli, Bacillus subtilis, Sulfolobus solfataricus, Sulfolobus acidocaldarius, Methanococcus jannaschii, Pyrococcus horikoshii, Pyrococcus furiosus and 39 others.

Url: http://www.rnasoft.ca/strand/