RNA Type: Structure
Overview: The RNA Secondary Structure and Statistical Analysis Database (RNA STRAND) is a database of known secondary structures of several RNA types (e.g. group I intron, RNase P, ribozymes, SRP).
Search Methods:
  • Similarity: search by conserved sequence pattern (e.g. AMGHGNUC*ACGNA).
  • Keyword: search by organism, source ID, sequence or abstract shapes.
  • TAG: search by RNA type, source, length, validation (NMR or X-Ray), number of molecules in the complex, fragment, duplicate, abstract shapes level or not to include non-redundant sequence.
  • Tabular: search by RNA STRAND ID, Molecule name, RNA Type, Organism, Source, Source ID, Length.
Source: Rfam, RCSB/PDB/NDB, CRW, tmRNA, Sprinzl tRNA Database, RNase P Database, SRP Database, Nucleic Acid Database, RNAView software.
Information Source: Experimental, In silico annotation, Manual curation.
Information Content: Annotation, Correlation, Cumulative distribution , Domain, Histograms, Motif, Source, Structural Elements, Structure.
Reference: Andronescu et al., 2008
PubmedID: 18700982.
Year: 2008
Multiple search: Yes
Download: No
Genomic Overview: No
Organism: Homo sapiens (Human), Canis familiaris (Dog), Mus musculus (House Mouse), Bos Taurus (Cattle), Oryza sativa (Rice), Saccharomyces cerevisiae, Xenopus laevis, Human immunodeficiency virus 1 (HIV ), Escherichia coli, Bacillus subtilis, Sulfolobus solfataricus, Sulfolobus acidocaldarius, Methanococcus jannaschii, Pyrococcus horikoshii, Pyrococcus furiosus and 39 others.

Url: http://www.rnasoft.ca/strand/
June 2018: Release 3.0