- Search Result
- Database Details
RNA Type: small RNA
Overview: The Cereal small RNAs database (CSRDB) is a repository of maize and rice miRNAs and siRNAs obtained by 454 high-throughput sequencing and corresponding predicted mRNA targets generated by in silico analysis.
- Similarity: search sequences using the BLAST program. There is a tool to search for conserved target sites and transcripts.
- Keyword: search by transcript/small RNA ID or small RNA sequence.
Source: In house experiments, miRBase, Rfam and Prediction tools (FASTH program, alignment tools â€“ T-COFFEE.
Information Source: Experimental, In silico annotation.
Information Content: Annotation, Cereal, High-throughput sequencing, Next-generation data, Prediction tools, Sequence, Target site.
Reference: Johnson et al., 2006
Multiple search: No
Download: FASTA, Other.
Genomic Overview: Yes