RNA Type: Multiple classes
Overview: The ncRNA-Protein Interaction Database (NPInter) is a repository of experimentally verified functional interactions between ncRNAs (excluding tRNAs and rRNAs) and protein related biomacromolecules (proteins, mRNAs or genomic DNAs). The authors use a classification system of ncRNA functional interactions, which are divided into eight different interaction processes: i) ncRNA binds to protein, ii) ncRNA regulates the mRNA, iii) ncRNA indirectly regulates a gene (DNA), iv) ncRNA is regulated by the protein, v) ncRNA as a factor affects the protein's function, vi) The protein as a factor affects the ncRNA's function, vii) genetic interaction between the ncRNA gene and the protein gene, viii) special linkages between the ncRNA and the protein.
Search Methods:
  • Keyword: search by any keyword based on content of the TAG options.
  • TAG: search by ncRNA, Protein, NONCODE ID, Entrez Gene ID, Swiss-Prot ID, PubMed ID, EcoCyc, SGD, FlyBase, WormBase, MGI and OMIM.
Source: Literature, NONCODE, FlyBase, PubMed, Entrez, SGD, EcoCyc, Swiss-Prot, WormBase, MGI, OMIM.
Information Source: Experimental.
Information Content: Annotation, Classification, Interaction, Protein, Sequence.
Reference: Wu et al., 2006
PubmedID: 16381834.
Year: 2006
Multiple search: Yes
Download: No
Genomic Overview: No
Organism: Homo sapiens (Human), Mus musculus (House Mouse), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Saccharomyces cerevisiae, Escherichia coli.

June 2018: Release 3.0