NPInter

RNA Type: Multiple classes

Overview: The ncRNA-Protein Interaction Database (NPInter) is a repository of experimentally verified functional interactions between ncRNAs (excluding tRNAs and rRNAs) and protein related biomacromolecules (proteins, mRNAs or genomic DNAs). The authors use a classification system of ncRNA functional interactions, which are divided into eight different interaction processes: i) ncRNA binds to protein, ii) ncRNA regulates the mRNA, iii) ncRNA indirectly regulates a gene (DNA), iv) ncRNA is regulated by the protein, v) ncRNA as a factor affects the protein's function, vi) The protein as a factor affects the ncRNA's function, vii) genetic interaction between the ncRNA gene and the protein gene, viii) special linkages between the ncRNA and the protein.

Search Methods:

• Keyword: search by any keyword based on content of the TAG options.
• TAG: search by ncRNA, Protein, NONCODE ID, Entrez Gene ID, Swiss-Prot ID, PubMed ID, EcoCyc, SGD, FlyBase, WormBase, MGI and OMIM.

Source: Literature, NONCODE, FlyBase, PubMed, Entrez, SGD, EcoCyc, Swiss-Prot, WormBase, MGI, OMIM.

Information Source: Experimental.

Information Content: Annotation, Classification, Interaction, Protein, Sequence.

Reference: Wu et al., 2006

PubmedID: 16381834.

Year: 2006

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Homo sapiens (Human), Mus musculus (House Mouse), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Saccharomyces cerevisiae, Escherichia coli.

Url: http://www.bioinfo.org.cn/NPInter/