miSolRNA

RNA Type: miRNA

Overview: miSolRNA is a database of tomato miRNAs and target genes. It stores expression profiles obtained by quantitative metabolic loci (QML) and quantitative trait loci (QTLs) approaches.

Search Methods:

• Similarity: query your sequence using the BLAST program.
• Keyword: search by general terms (e.g. resistance), target name.
• TAG: search by miRNA name, chromosome fraction, display information (e.g. QTL, alignment etc) or fields search (QTL, metabolites or Hit definition).

Source: miRBase, Unigene, Augustus and GenomeTheader prediction, Tomato-EXPEN 2000 and 1992 (SOL Genomics Network), Experimental data (Carrari et al., 2006; Schauer et al., 2006; Eshed and Zamir, 1995) and In house pipeline.

Information Source: Experimental, In silico annotation.

Information Content: Alignment, Annotation, Expression, Metabolite, QTL, Sequence, Target gene, Tomato.

Reference: Dweep et al., 2011

PubmedID: 21059227.

Year: 2010

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Solanum lycopersicum (Tomato ).

Url: http://www.misolrna.org/