RNA Type: Structure
Overview: The database of Non-Canonical Interactions in known RNA structures (NCIR) is a repository of the structures of RNAs in which a particular rare base pair has been found. The data include non-canonical interactions observed in published crystal and NMR structures of tRNAs, group I introns, ribozymes, RNA aptamers and synthetic oligonucleotides.
Search Methods:
  • Keyword: search by general terms, authors or journal. Searches are restricted by the TAG options.
  • TAG: search by structure, chemical shift, puckers info, glycosidic conf, melting point, extra information or free energy.
  • Tabular: search by base pair type, author's name or structure.
Source: Literature.
Information Source: Literature.
Information Content: Annotation, Base pair, Base Quadruples, Base Triples, Free energy, Interaction, Non-Canonical base pair, Structural Elements, Structure.
Reference: Nagaswamy et al., 2002
PubmedID: 11752347.
Year: 2002
Multiple search: No
Download: No
Genomic Overview: No
Organism: Unspecified.

June 2018: Release 3.0