NCIR

RNA Type: Structure

Overview: The database of Non-Canonical Interactions in known RNA structures (NCIR) is a repository of the structures of RNAs in which a particular rare base pair has been found. The data include non-canonical interactions observed in published crystal and NMR structures of tRNAs, group I introns, ribozymes, RNA aptamers and synthetic oligonucleotides.

Search Methods:

• Keyword: search by general terms, authors or journal. Searches are restricted by the TAG options.
• TAG: search by structure, chemical shift, puckers info, glycosidic conf, melting point, extra information or free energy.
• Tabular: search by base pair type, author's name or structure.

Source: Literature.

Information Source: Literature.

Information Content: Annotation, Base pair, Base Quadruples, Base Triples, Free energy, Interaction, Non-Canonical base pair, Structural Elements, Structure.

Reference: Nagaswamy et al., 2002

PubmedID: 11752347.

Year: 2002

Multiple search: No

Download: No

Genomic Overview: No

Organism: Unspecified.

Url: http://prion.bchs.uh.edu/bp_type/