RNAdb

RNA Type: Multiple classes

Overview: RNAdb is a sequence and annotation database of mammalian ncRNAs (excluding housekeeping ncRNAs). There are distinct datasets with information obtained through computational prediction, transcriptome projects and literature-based manual curation.

Search Methods:

• Similarity: search sequences using the BLAST program.
• Keyword: search by terms which it can be different for each dataset (e.g. ncRNA type, sequence ID, description, Genbank accession, species or source).
• TAG: search by dataset (see source item) and filter options (e.g. species, noncoding category, development).
• Tabular: search by ID, description, Genbank accession/Reference, species or data source.

Source: miRBase, H-invDB, FANTOM3, snoRNA-LBME-db, Antisense ncRNA Pipeline, piRNAs, RNAz, Non-coding RNA Search, Evofold, Literature.

Information Source: In silico annotation, Literature, Manual curation.

Information Content: Literature, Mammalian, ncRNAs from Prediction data, Transcription.

Reference: Pang et al. 2007; Pang et al. 2005

PubmedID: 15608161, 17145715.

Year: 2007;2005

Multiple search: Yes

Download: BED, FASTA, Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Bos Taurus (Cattle), Pan troglodytes (Chimpanzee), Edwardsiella sp. LADL05-105, Carnobacterium sp. 17-4, Anabaena azollae 0708.

Url: http://research.imb.uq.edu.au/rnadb/