SRPDB

RNA Type: SRP RNA

Overview: The Signal Recognition Particle Database (SRPDB) is a repository of SRP RNAs and of protein components in several organisms from different kingdoms. It also stores information related to alignment, annotation and phylogeny.

Search Methods:

• Tabular: search by species, group, subgroup or accession (ordered phylogenetically or alphabetically.

Source: Literature, In-house tool (SRP-Scan), Other Tools (BLAST, RNABOB, INFERNAL, PATSCAN and MFOLD), NCBI Taxonomy, GenBank and EMBL.

Information Source: In silico annotation, Literature, Manual curation.

Information Content: Alignment, All kingdom, Motif, Phylogeny, Protein, Sequence, Structure.

Reference: Andersen et al., 2006

PubmedID: 7524020, 7687350, 9399828, 9847170, 10592215, 11125080, 12520023, 16381838, 2147483647.

Year: 2006;2003;2001;2000;1999;1998;1997;1996;1994;1993

Multiple search: No

Download: FASTA, Other.

Genomic Overview: Yes

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Ciona intestinalis, Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Sus scrofa (Wild Boar), Monodelphis domestica, Pan troglodytes (Chimpanzee), Dictyostelium discoideum and 530 others.

Url: http://rnp.uthscsa.edu/rnp/SRPDB/SRPDB.html