U12DB

RNA Type: snoRNA

Overview: The U12 Intron Database (U12DB) is a repository of orthologous U12-type spliceosomal introns of 20 genomes. These introns were mapped via spliced alignment of completely sequenced eukaryotic genomes and associated orthologous introns identified.

Search Methods:

• Keyword: search by any term. Searched are restricted by the TAG options.
• TAG: search by introns, intron clusters, gene Id, Ensembl gene Id, gene name and gene description. It can also be filtered by conserved, absent, alternatively-spliced, type switch and subtype switch introns.

Source: UCSC Genome Browser, FlyBase, Ensembl, Inparanoid and Exonerate program.

Information Source: In silico annotation, Manual curation.

Information Content: Acceptor/Donor site, Annotation, Gene, Sequence, Transcripts, U12-type intron.

Reference: Alioto, 2007

PubmedID: 17082203.

Year: 2007

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Takifugu rubripes (Fugu), Gallus gallus (Chicken), Ciona intestinalis, Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Monodelphis domestica, Pan troglodytes (Chimpanzee) and 5 others.

Url: http://genome.imim.es/datasets/u12/