Plant snoRNA database

RNA Type: snoRNA

Overview: Plant snoRNA database is a repository of experimentally verified and curated small nucleolar RNAs from Arabidopsis thaliana and similar sequences in 17 additional plant species identified by sequence comparisons with Arabidopsis.

Search Methods:

• TAG: search by organism, snoRNA name or ID (e.g. SnoRNA10), sequence (just to get it).
• Tabular: search by sRNA genes alignments in plant species or rRNA modification sites.

Source: Literature, sequence comparisons between A. thaliana and other 17 genomes.

Information Source: In silico annotation, Literature.

Information Content: Alignment, Annotation, Conservation sites, Modification sites, Sequence.

Reference: Brown et al., 2003

PubmedID: 12520043.

Year: 2003

Multiple search: No

Download: FASTA.

Genomic Overview: No

Organism: Arabidopsis Thaliana (Thale Cress), Glycine Max (Soybean), Lycopersicon esculentum, Medicago truncatula (Barrel Medic), Chlamydomonas reinhardtii (Green Alga), Pinus taeda, Physcomitrella patens, Hordeum vulgare, Sorghum bicolor (Sorghum), Triticum aestivum (Bread wheat), Zea mays, Beta vulgaris, Ceratodon purpureus, Citrus unshiu, Lycopersicon hirsutum and 3 others.

Url: http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home