Sno/scaRNAbase

RNA Type: snoRNA

Overview: Small nucleolar RNA and small cajal body-specific RNA database (Sno/scaRNAbase) is a curated repository for small nucleolar RNAs and small cajal body-specific RNAs from 85 organisms. It contains data retrieved from literature manuscripts and from GenBank annotation.

Search Methods:

• Similarity: query your sequence using the BLAST programs.
• Keyword: search by snoRNA/scaRNA names.
• TAG: search by snoRNA/scaRNA groups, and by organism.
• Tabular: search by organism, group of snoRNA/scaRNA (e.g. box C/D), reference (e.g. author, PubMed ref, volume, page etc), GenBank accession number, length.

Source: Literature, GenBank.

Information Source: In silico annotation, Manual curation.

Information Content: Annotation, Sequence, Structure.

Reference: Xie et al., 2006

PubmedID: 17099227.

Year: 2007

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Bos Taurus (Cattle), Dictyostelium discoideum, Drosophila virilis, Chlamydomonas reinhardtii (Green Alga), Beta vulgaris, Ceratodon purpureus, Citrus unshiu, Chelydra serpentina, Candida albicans, Cryptosporidium parvum and 14 others.

Url: http://gene.fudan.sh.cn/snoRNAbase.nsf