piRNABank

RNA Type: piRNA

Overview: piRNABank is a database of sequences and annotation information of Piwi-interacting RNAs (piRNAs), obtained from biological databases and literature.

Search Methods:

• Similarity: query your sequence using the BLAST program.
• Keyword: search by piRNABank ID or NCBI Accession number, gene name/symbol.
• TAG: search by organism.
• Genomic Location: search by chromosome location.
• Density of ncRNAs: search by chromosome, coordinate position and by a range of piRNA densites in a cluster.

Source: NCBI, RNAdb, UCSC Genome Browser.

Information Source: In silico annotation, Literature.

Information Content: Cluster, Homology, Repeat, Sequence, Transposable Elements.

Reference: Lakshmi & Agrawal, 2008

PubmedID: 17881367.

Year: 2008

Multiple search: No

Download: Request.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Drosophila melanogaster (Common Fruit Fly), Ornithorhynchus anatinus (Platypus).

Url: http://pirnabank.ibab.ac.in/