RepTar

RNA Type: miRNA

Overview: RepTar is a database of microRNA target predictions in human, mouse and viral genomes. The database contains a set of conventional and non-conventional miRNA-binding sites generated by an in-house program.

Search Methods:

• Keyword: search by miRNA name, gene name. Some binding sites related threshold related are available (e.g. minimal free energy, site conservation etc).
• TAG: search by species, miRNA source (e.g. human, mouse or viral dataset), binding site, known/unknown repeat elements, keyword search category (e.g. gene, miRNA name, seed type).
• Tabular: search by organism and by miRNA name/sequence.

Source: miRBase, RepTar algorithm program (in-house tool), UCSC Genome Browser (hg18 and mm9 databases – 3’UTR data).

Information Source: In silico annotation.

Information Content: Binding site, Computational, Conservation, Free energy, Gene, Motif, Nonconventional binding sites, Pattern, Repeat, Sequence, Target, Viral.

Reference: Naama et al., 2011

PubmedID: 21149264.

Year: 2011

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Mus musculus (House Mouse), Human EBV virus, Human HCMV virus, Human KSHV virus, Mouse MCMV virus, Mouse MGHV virus.

Url: http://bioinformatics.ekmd.huji.ac.il/reptar/