PuTmiR

RNA Type: miRNA

Overview: The Putative Transcription factor for microRNA Regulation Database (PuTmiR) is a repository of transcription factors (TFs) of human miRNAs. This information is based on computational analysis of putative TFs binding sites located up to 10 kilobases upstream or downstrem of miRNAs. It is also possible to identify TFs located in a user-specified distance from the miRNA.

Search Methods:

• Keyword: search by miRNA name.
• Genomic Location: search TFs for a specific miRNA by specifying the length of the searched region (default is 10,000 bp).

Source: miRBase, UCSC Genome Browser, TRANSFAC (matrix).

Information Source: In silico annotation.

Information Content: Downstream region, Localization, RefSeq, Regulatory network, Transcription Factor, Upstream region.

Reference: Bandyopadhyay and Bhattacharyya, 2010

PubmedID: 20398296.

Year: 2010

Multiple search: No

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human).

Url: http://www.isical.ac.in/~bioinfo_miu/TF-miRNA.php