miRSel

RNA Type: miRNA

Overview: miRSel is a compilation of microRNA, gene/protein relations (e.g. physical target, co-expression, repression, induction and cleavage) in human, mouse and rat genomes, based on text mining of published abstracts.

Search Methods:

• Keyword: search by miRNA name or gene family (in miRNA search); by database reference name (e.g. LOCUSLINK:3198) or by protein name (in target search); or by PubMed ID or any article terms (e.g. author name); or by gene ontology terms/code.
• TAG: search by database dataset (e.g. miRSel, TarBase etc), organism.

Source: Literature (PubMed), TarBase, miRecords, miR2Disease, Gene Ontology, syngrep tool, databases used in development of dictionary of miRNA/gene/protein synonyms terms (HGNC (HUGO Gene Nomenclature Committee), MGD (Mouse Genome Database), NCBI (Entrez Gene, taxonomy), Swiss-Prot, miRGen, miRBase).

Information Source: In silico annotation, Literature, Manual curation.

Information Content: Gene, Gene Ontology, Protein, Target gene, Text mining.

Reference: Gerlach et al., 2009

PubmedID: 18927110.

Year: 2010

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse).

Url: http://services.bio.ifi.lmu.de/mirsel/