- Search Result
- Database Details
RNA Type: miRNA
Overview: miROrtho is a database of predicted miRNA obtained from an in-house pipeline. The pipeline is a mix of SVM-based classifiers and orthology analysis adapted from OrthoDB (Kriventseva et al., 2008).
- Similarity: query your sequence using the BLAST program. It is possible to determine an E-value threshold.
- Keyword: search by miRNA name (one or more)/families/group id or gene.
- Tabular: search by organism.
- Genomic Location: search by organism and chromosome coordinate.
Source: Genome Sequence and RNALfold tool.
Information Source: In silico annotation.
Information Content: Alignment, Animal, Conservation, Gene, Orthologs, Sequence, Structure.
Reference: Lagan et al., 2009
Multiple search: Yes
Genomic Overview: No