miROrtho

RNA Type: miRNA

Overview: miROrtho is a database of predicted miRNA obtained from an in-house pipeline. The pipeline is a mix of SVM-based classifiers and orthology analysis adapted from OrthoDB (Kriventseva et al., 2008).

Search Methods:

• Similarity: query your sequence using the BLAST program. It is possible to determine an E-value threshold.
• Keyword: search by miRNA name (one or more)/families/group id or gene.
• Tabular: search by organism.
• Genomic Location: search by organism and chromosome coordinate.

Source: Genome Sequence and RNALfold tool.

Information Source: In silico annotation.

Information Content: Alignment, Animal, Conservation, Gene, Orthologs, Sequence, Structure.

Reference: Lagan et al., 2009

PubmedID: 18927110.

Year: 2009

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Takifugu rubripes (Fugu), Gallus gallus (Chicken), Ciona intestinalis, Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Monodelphis domestica, Pan troglodytes (Chimpanzee), Gasterosteus aculeatus and 31 others.

Url: http://cegg.unige.ch/mirortho/