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NRDR - The Non-coding RNA Databases Resource


Database version: Aug 31, 2015
RNA Type: Multiple classes
Overview: rVarBase annotates variants regulatory feature in three fields for lncRNAs, coding genes and microRNAs: chromatin state of the region surrounding variant; regulatory elements overlapped with variant; and variants potential target genes. It also provides optioned extended annotation for variants, including: LD-proxies of known SNP, SNP/CNV that is overlapped with or located in queried variant, traits (disease and expression quantitative trait) associated with variant. rVarBase is an updated version of the database rSNPBase.
Search Methods:
  • Genomic Location: Genomic coordinates through a specific form
  • Keyword: Search by miRNA name, gene name or lncRNA name, combined with several other features
Source: dbSNP, dbVar, UCSC Genome Browser, RoadMap, ENCODE, HapMap, 1000 genomes, GWAS Catalog, CNVD, eQTL database, Lncipedia, miRBase, ENSEMBL, lncRNA2Target, miR2Disease, miRTarBase, TargetScan, miRanda, JASPAR, TRANSFAC
Information Source: In silico annotation.
Information Content: .
Reference: Guo et al. 2016. Nucleic Acids Research. 44(D1):D888-93.
PubmedID: 26503253.
Year: 2016
Multiple search: No
Download: Other.
Genomic Overview: No
Organism: Homo sapiens (Human).

Url: http://rv.psych.ac.cn/index.do
June 2018: Release 3.0