rVarBase

Database version: Aug 31, 2015

RNA Type: Multiple classes

Overview: rVarBase annotates variants regulatory feature in three fields for lncRNAs, coding genes and microRNAs: chromatin state of the region surrounding variant; regulatory elements overlapped with variant; and variants potential target genes. It also provides optioned extended annotation for variants, including: LD-proxies of known SNP, SNP/CNV that is overlapped with or located in queried variant, traits (disease and expression quantitative trait) associated with variant. rVarBase is an updated version of the database rSNPBase.

Search Methods:

• Genomic Location: Genomic coordinates through a specific form
• Keyword: Search by miRNA name, gene name or lncRNA name, combined with several other features

Source: dbSNP, dbVar, UCSC Genome Browser, RoadMap, ENCODE, HapMap, 1000 genomes, GWAS Catalog, CNVD, eQTL database, Lncipedia, miRBase, ENSEMBL, lncRNA2Target, miR2Disease, miRTarBase, TargetScan, miRanda, JASPAR, TRANSFAC

Information Source: In silico annotation.

Information Content: .

Reference: Guo et al. 2016. Nucleic Acids Research. 44(D1):D888-93.

PubmedID: 26503253.

Year: 2016

Multiple search: No

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human).

Url: http://rv.psych.ac.cn/index.do